Function reference • adjclust

Main functions

adjClust(): Adjacency-constrained Clustering

hicClust(): Adjacency-constrained Clustering of Hi-C contact maps

snpClust(): Adjacency-constrained Clustering of Single Nucleotide Polymorphisms

Methods for class ‘chac’

as.hclust(<chac>) print(<chac>) head(<chac>) summary(<chac>) plot(<chac>) diagnose() correct() cutree_chac(): Class chac

Other functions

plotSim(): Plot (dis)similarity matrix

select(): Clustering selection